QTL Accession ID | AQCW013 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | CHLCN |
Trait Name | chlorophyll content |
Published Symbol | |
Trait Synonym(s) | |
Trait Category | Biochemical |
Chromosome | 12 |
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 12 | 23,517,144-25,064,618 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 12 | 91.4-97.3 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQCW013 | 12 | 91.4 | 97.3 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | R1709 | RFLP | Oryza sativa | qtl_marker |
To | S5375S | RFLP | Oryza sativa | qtl_marker |
To | E50281S | RFLP | Oryza sativa | qtl_marker |
To | E50693 | RFLP | Oryza sativa | qtl_marker |
To | C460 | RFLP | Oryza sativa | qtl_marker |
To | R2961 | RFLP | Oryza sativa | qtl_marker |
To | C87 | RFLP | Oryza sativa | qtl_marker |
To | S11447 | RFLP | Oryza sativa | qtl_marker |
To | G148 | RFLP | Oryza sativa | qtl_marker |
To | F302S | RFLP | Oryza sativa | qtl_marker |
To | C52936S | RFLP | Oryza sativa | qtl_marker |
To | C1069 | RFLP | Oryza sativa | qtl_marker |
To | C454 | RFLP | Oryza sativa | qtl_marker |
To | C63222S | RFLP | Oryza sativa | qtl_marker |
To | S861 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000495) | Yang-Q-H et al., 2003 (IAGP) |
Plant Structure | (PO:0009025) | Yang-Q-H et al., 2003 (SM) |
Plant Growth and Development Stage | (PO:0007134) | Yang-Q-H et al., 2003 (SM) |
(PO:0007130) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Yang-Q-H et al., 2003 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Yang-Q-H et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr12 | 23,517,144 | 25,064,618 | ~160K SNPs x 20 accessions (McNally 2... | 924 | Search for SNPs |
chr12 | 23,517,144 | 25,064,618 | '1536 chip' - 1311 SNPs x 395 rice ac... | 7 | Search for SNPs |
chr12 | 23,517,144 | 25,064,618 | B-Gross/J-Yulin SNP Pi-ta study in AA... | 0 | |
chr12 | 23,517,144 | 25,064,618 | Huang X, et al, Nat Genetics 2010 Nov... | 4,393 | Search for SNPs |
chr12 | 23,517,144 | 25,064,618 | RiceDiversity 44K SNP assay, 34 trait... | 4,393 | Search for SNPs |
chr12 | 23,517,144 | 25,064,618 | RiceDiversity 44K SNP assay, 34 trait... | 166 | Search for SNPs |