QTL Accession ID | AQCW012 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | CHLCN |
Trait Name | chlorophyll content |
Published Symbol | |
Trait Synonym(s) | |
Trait Category | Biochemical |
Chromosome | 2 |
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 32,883,159-33,626,591 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 2 | 139.3-144.7 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQCW012 | 2 | 139.3 | 144.7 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C560 | RFLP | Oryza sativa | qtl_marker |
To | S5450S | RFLP | Oryza sativa | qtl_marker |
To | E3603S | RFLP | Oryza sativa | qtl_marker |
To | S3516S | RFLP | Oryza sativa | qtl_marker |
To | S10030 | RFLP | Oryza sativa | qtl_marker |
To | E50007S | RFLP | Oryza sativa | qtl_marker |
To | S5424S | RFLP | Oryza sativa | qtl_marker |
To | C253 | RFLP | Oryza sativa | qtl_marker |
To | R759 | RFLP | Oryza sativa | qtl_marker |
To | C1119 | RFLP | Oryza sativa | qtl_marker |
To | G275 | RFLP | Oryza sativa | qtl_marker |
To | R3324 | RFLP | Oryza sativa | qtl_marker |
To | R2609 | RFLP | Oryza sativa | qtl_marker |
To | C348 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000495) | Yang-Q-H et al., 2003 (IAGP) |
Plant Structure | (PO:0009025) | Yang-Q-H et al., 2003 (SM) |
Plant Growth and Development Stage | (PO:0007134) | Yang-Q-H et al., 2003 (SM) |
(PO:0007130) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Yang-Q-H et al., 2003 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Yang-Q-H et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr2 | 32,883,159 | 33,626,591 | ~160K SNPs x 20 accessions (McNally 2... | 316 | Search for SNPs |
chr2 | 32,883,159 | 33,626,591 | '1536 chip' - 1311 SNPs x 395 rice ac... | 1 | Search for SNPs |
chr2 | 32,883,159 | 33,626,591 | Huang X, et al, Nat Genetics 2010 Nov... | 395 | Search for SNPs |
chr2 | 32,883,159 | 33,626,591 | RiceDiversity 44K SNP assay, 34 trait... | 395 | Search for SNPs |
chr2 | 32,883,159 | 33,626,591 | RiceDiversity 44K SNP assay, 34 trait... | 80 | Search for SNPs |