QTL Accession ID | AQCW009 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | H2O2CN |
Trait Name | H2O2 content |
Published Symbol | |
Trait Synonym(s) | hydrogen peroxide |
Trait Category | Biochemical |
Chromosome | 1 |
Comments | Hydrogen peroxide induces plants to respond to environment stress by regulation of the second messenger system. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 39,428,054-39,680,761 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 1 | 157.6-157.6 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQCW009 | 1 | 157.6 | 157.6 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | PSR170 | RFLP | Triticum aestivum | qtl_marker |
To | R2018 | RFLP | Oryza sativa | qtl_marker |
To | R2414 | RFLP | Oryza sativa | qtl_marker |
To | G2200 | RFLP | Oryza sativa | qtl_marker |
To | L1082 | RFLP | Oryza sativa | qtl_marker |
To | R2657 | RFLP | Oryza sativa | qtl_marker |
To | C346 | RFLP | Oryza sativa | qtl_marker |
To | S1008 | RFLP | Oryza sativa | qtl_marker |
To | C3120 | RFLP | Oryza sativa | qtl_marker |
To | Y3653R | RFLP | Oryza sativa | qtl_marker |
To | G6001 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000605) | Yang-Q-H et al., 2003 (IAGP) |
Plant Structure | (PO:0009025) | Yang-Q-H et al., 2003 (SM) |
(PO:0000003) | Gramene curators, 2007 (IC) | |
(PO:0009011) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0009012) | Yang-Q-H et al., 2003 (SM) |
(PO:0007033) | Yang-Q-H et al., 2003 (SM) | |
Growth Stage | (GRO:0007001) | Yang-Q-H et al., 2003 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Yang-Q-H et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr1 | 39,428,054 | 39,680,761 | ~160K SNPs x 20 accessions (McNally 2... | 206 | Search for SNPs |
chr1 | 39,428,054 | 39,680,761 | '1536 chip' - 1311 SNPs x 395 rice ac... | 1 | Search for SNPs |
chr1 | 39,428,054 | 39,680,761 | Huang X, et al, Nat Genetics 2010 Nov... | 396 | Search for SNPs |
chr1 | 39,428,054 | 39,680,761 | RiceDiversity 44K SNP assay, 34 trait... | 396 | Search for SNPs |
chr1 | 39,428,054 | 39,680,761 | RiceDiversity 44K SNP assay, 34 trait... | 34 | Search for SNPs |