QTL Accession ID | AQCW006 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | CHLCN |
Trait Name | chlorophyll content |
Published Symbol | q-Chl2b |
Trait Synonym(s) | |
Trait Category | Biochemical |
Chromosome | 2 |
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 20,445,714-22,331,533 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 2 | 80.5-88.2 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQCW006 | 2 | 80.5 | 88.2 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | G1314 | RFLP | Oryza sativa | qtl_marker |
To | C796 | RFLP | Oryza sativa | qtl_marker |
To | G1456 | RFLP | Oryza sativa | qtl_marker |
To | S10814 | RFLP | Oryza sativa | qtl_marker |
To | R447 | RFLP | Oryza sativa | qtl_marker |
To | C499 | RFLP | Oryza sativa | qtl_marker |
To | V197 | RFLP | Oryza sativa | qtl_marker |
To | V219 | RFLP | Oryza sativa | qtl_marker |
To | E3634S | RFLP | Oryza sativa | qtl_marker |
To | C1566 | RFLP | Oryza sativa | qtl_marker |
To | R3041 | RFLP | Oryza sativa | qtl_marker |
To | V184 | RFLP | Oryza sativa | qtl_marker |
To | C621 | RFLP | Oryza sativa | qtl_marker |
To | R26 | RFLP | Oryza sativa | qtl_marker |
To | S1716 | RFLP | Oryza sativa | qtl_marker |
To | S1412 | RFLP | Oryza sativa | qtl_marker |
To | S2068 | RFLP | Oryza sativa | qtl_marker |
To | L22 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000495) | Yang-Q-H et al., 2003 (IAGP) |
Plant Structure | (PO:0009025) | Yang-Q-H et al., 2003 (SM) |
Plant Growth and Development Stage | (PO:0007134) | Yang-Q-H et al., 2003 (SM) |
(PO:0007130) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Yang-Q-H et al., 2003 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Yang-Q-H et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr2 | 20,445,714 | 22,331,533 | ~160K SNPs x 20 accessions (McNally 2... | 919 | Search for SNPs |
chr2 | 20,445,714 | 22,331,533 | '1536 chip' - 1311 SNPs x 395 rice ac... | 7 | Search for SNPs |
chr2 | 20,445,714 | 22,331,533 | Huang X, et al, Nat Genetics 2010 Nov... | 5,459 | Search for SNPs |
chr2 | 20,445,714 | 22,331,533 | RiceDiversity 44K SNP assay, 34 trait... | 5,459 | Search for SNPs |
chr2 | 20,445,714 | 22,331,533 | RiceDiversity 44K SNP assay, 34 trait... | 193 | Search for SNPs |