QTL Accession ID | AQCW005 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | CHLCN |
Trait Name | chlorophyll content |
Published Symbol | q-Chl2a |
Trait Synonym(s) | |
Trait Category | Biochemical |
Chromosome | 2 |
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 30,068,383-32,036,692 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 2 | 128.3-139.3 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQCW005 | 2 | 128.3 | 139.3 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | ABC175 | RFLP | Hordeum vulgare | qtl_marker |
To | ABG1 | RFLP | Hordeum vulgare | qtl_marker |
To | C1408 | RFLP | Oryza sativa | qtl_marker |
To | S11127 | RFLP | Oryza sativa | qtl_marker |
To | C601 | RFLP | Oryza sativa | qtl_marker |
To | C10187S | RFLP | Oryza sativa | qtl_marker |
To | C12691 | RFLP | Oryza sativa | qtl_marker |
To | C11895S | RFLP | Oryza sativa | qtl_marker |
To | S1911 | RFLP | Oryza sativa | qtl_marker |
To | L629 | RFLP | Oryza sativa | qtl_marker |
To | R685 | RFLP | Oryza sativa | qtl_marker |
To | C370 | RFLP | Oryza sativa | qtl_marker |
To | C932 | RFLP | Oryza sativa | qtl_marker |
To | PSR2 | RFLP | Triticum aestivum | qtl_marker |
To | C679 | RFLP | Oryza sativa | qtl_marker |
To | S13245 | RFLP | Oryza sativa | qtl_marker |
To | Y8007R | RFLP | Oryza sativa | qtl_marker |
To | umc223 | RFLP | Zea mays subsp. mays | qtl_marker |
To | R2609 | RFLP | Oryza sativa | qtl_marker |
To | C560 | RFLP | Oryza sativa | qtl_marker |
To | C92 | RFLP | Oryza sativa | qtl_marker |
To | S5450S | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000495) | Yang-Q-H et al., 2003 (IAGP) |
Plant Structure | (PO:0009025) | Yang-Q-H et al., 2003 (SM) |
Plant Growth and Development Stage | (PO:0007134) | Yang-Q-H et al., 2003 (SM) |
(PO:0007130) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Yang-Q-H et al., 2003 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Yang-Q-H et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr2 | 30,068,383 | 32,036,692 | ~160K SNPs x 20 accessions (McNally 2... | 969 | Search for SNPs |
chr2 | 30,068,383 | 32,036,692 | '1536 chip' - 1311 SNPs x 395 rice ac... | 4 | Search for SNPs |
chr2 | 30,068,383 | 32,036,692 | Huang X, et al, Nat Genetics 2010 Nov... | 4,586 | Search for SNPs |
chr2 | 30,068,383 | 32,036,692 | RiceDiversity 44K SNP assay, 34 trait... | 4,586 | Search for SNPs |
chr2 | 30,068,383 | 32,036,692 | RiceDiversity 44K SNP assay, 34 trait... | 213 | Search for SNPs |