QTL Accession ID | AQCW004 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | CHLCN |
Trait Name | chlorophyll content |
Published Symbol | |
Trait Synonym(s) | |
Trait Category | Biochemical |
Chromosome | 1 |
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 27,266,934-31,558,575 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 1 | 129.3-129.3 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQCW004 | 1 | 129.3 | 129.3 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | ABC261 | RFLP | Hordeum vulgare | qtl_marker |
To | L685 | RFLP | Oryza sativa | qtl_marker |
To | C1335 | RFLP | Oryza sativa | qtl_marker |
To | C1282 | RFLP | Oryza sativa | qtl_marker |
To | R2417 | RFLP | Oryza sativa | qtl_marker |
To | S10712 | RFLP | Oryza sativa | qtl_marker |
To | PSR156 | RFLP | Triticum aestivum | qtl_marker |
To | L694 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000495) | Yang-Q-H et al., 2003 (IAGP) |
Plant Structure | (PO:0009025) | Yang-Q-H et al., 2003 (SM) |
Plant Growth and Development Stage | (PO:0007134) | Yang-Q-H et al., 2003 (SM) |
(PO:0007130) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Yang-Q-H et al., 2003 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Yang-Q-H et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr1 | 27,266,934 | 31,558,575 | ~160K SNPs x 20 accessions (McNally 2... | 3,135 | Search for SNPs |
chr1 | 27,266,934 | 31,558,575 | '1536 chip' - 1311 SNPs x 395 rice ac... | 9 | Search for SNPs |
chr1 | 27,266,934 | 31,558,575 | Huang X, et al, Nat Genetics 2010 Nov... | 7,707 | Search for SNPs |
chr1 | 27,266,934 | 31,558,575 | RiceDiversity 44K SNP assay, 34 trait... | 7,707 | Search for SNPs |
chr1 | 27,266,934 | 31,558,575 | RiceDiversity 44K SNP assay, 34 trait... | 568 | Search for SNPs |