QTL Accession ID | AQCW003 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | CHLCN |
Trait Name | chlorophyll content |
Published Symbol | |
Trait Synonym(s) | |
Trait Category | Biochemical |
Chromosome | 1 |
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 33,925,557-34,037,039 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 1 | 136.9-136.9 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQCW003 | 1 | 136.9 | 136.9 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C1385S | RFLP | Oryza sativa | qtl_marker |
To | C813 | RFLP | Oryza sativa | qtl_marker |
To | L669 | RFLP | Oryza sativa | qtl_marker |
To | C61337S | RFLP | Oryza sativa | qtl_marker |
To | E30143S | RFLP | Oryza sativa | qtl_marker |
To | R1623S | RFLP | Oryza sativa | qtl_marker |
To | C11234S | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000495) | Yang-Q-H et al., 2003 (IAGP) |
Plant Structure | (PO:0009025) | Yang-Q-H et al., 2003 (SM) |
Plant Growth and Development Stage | (PO:0007134) | Yang-Q-H et al., 2003 (SM) |
(PO:0007130) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Yang-Q-H et al., 2003 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Yang-Q-H et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr1 | 33,925,557 | 34,037,039 | ~160K SNPs x 20 accessions (McNally 2... | 71 | Search for SNPs |
chr1 | 33,925,557 | 34,037,039 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr1 | 33,925,557 | 34,037,039 | Huang X, et al, Nat Genetics 2010 Nov... | 241 | Search for SNPs |
chr1 | 33,925,557 | 34,037,039 | RiceDiversity 44K SNP assay, 34 trait... | 241 | Search for SNPs |
chr1 | 33,925,557 | 34,037,039 | RiceDiversity 44K SNP assay, 34 trait... | 17 | Search for SNPs |