QTL Accession ID | AQCU234 | ||||||
---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
Trait Symbol | PNLG | ||||||
Trait Name | panicle length | ||||||
Published Symbol | |||||||
Trait Synonym(s) |
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Trait Category | Anatomy | ||||||
Chromosome | 3 | ||||||
Comments | This locus was found to have significant interaction with another locus, AQCU235, based on phenotypic data of IR64F1s population (derived from crosses between the RILs and the tester, IR64). |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 23,088,332-23,088,721 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI Lem/Teq RI QTL 2001 | BNL6.32 | 3 | 174-178.7 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQCU234 | 3 | 174 | 178.7 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RZ403 | RFLP | Oryza sativa | qtl_marker |
To | RG482 | RFLP | Oryza sativa | qtl_marker |
To | RM16 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RZ474 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000040) | Mei-H-W et al., 2003 (IAGP) |
Plant Structure | (PO:0009049) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Mei-H-W et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr3 | 23,088,332 | 23,088,721 | ~160K SNPs x 20 accessions (McNally 2... | 1 | Search for SNPs |
chr3 | 23,088,332 | 23,088,721 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr3 | 23,088,332 | 23,088,721 | Huang X, et al, Nat Genetics 2010 Nov... | 1 | Search for SNPs |
chr3 | 23,088,332 | 23,088,721 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |
chr3 | 23,088,332 | 23,088,721 | RiceDiversity 44K SNP assay, 34 trait... | 0 |