QTL Accession ID | AQCU138 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | LFLG |
Trait Name | leaf length |
Published Symbol | |
Trait Synonym(s) |
FLL flag-leaf length |
Trait Category | Anatomy |
Chromosome | 3 |
Comments | This locus was found to have significant interaction with another locus, AQCU139, based on phenotypic data of Z413F1s population (derived from crosses between the RILs and the tester, Zhong 413). Flag leaf length was measured to evaluate leaf length and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 25,128,239-25,128,864 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI Lem/Teq RI QTL 2001 | BNL6.32 | 3 | 178.7-190.5 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQCU138 | 3 | 178.7 | 190.5 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG482 | RFLP | Oryza sativa | qtl_marker |
To | RZ474 | RFLP | Oryza sativa | qtl_marker |
To | RZ403 | RFLP | Oryza sativa | qtl_marker |
To | C746 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000135) | Mei-H-W et al., 2003 (IAGP) |
Plant Structure | (PO:0009025) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Mei-H-W et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr3 | 25,128,239 | 25,128,864 | ~160K SNPs x 20 accessions (McNally 2... | 3 | Search for SNPs |
chr3 | 25,128,239 | 25,128,864 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr3 | 25,128,239 | 25,128,864 | Huang X, et al, Nat Genetics 2010 Nov... | 0 | |
chr3 | 25,128,239 | 25,128,864 | RiceDiversity 44K SNP assay, 34 trait... | 0 | |
chr3 | 25,128,239 | 25,128,864 | RiceDiversity 44K SNP assay, 34 trait... | 2 | Search for SNPs |