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Oryza sativa QTL "AQCU124" (plant height)
| QTL Accession ID | AQCU124 | ||||
|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
| Trait Symbol | PTHT | ||||
| Trait Name | plant height | ||||
| Published Symbol | |||||
| Trait Synonym(s) |
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| Trait Category | Vigor | ||||
| Chromosome | 2 | ||||
| Comments | This locus was found to have significant interaction with another locus, AQCU125, based on phenotypic data of Z413F1s population (derived from crosses between the RILs and the tester, Zhong 413). |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 18,534,162-22,596,902 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | IRRI Lem/Teq RI QTL 2001 | BNL6.32 | 2 | 129.6-149.7 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQCU124 | 2 | 129.6 | 149.7 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | CDO718 | RFLP | Avena sativa | qtl_marker |
| To | G45 | RFLP | Oryza sativa | qtl_marker |
| To | RM324 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | C624 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000207) | Mei-H-W et al., 2003 (IAGP) |
| Plant Structure | (PO:0009006) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| (PO:0007134) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
| (GRO:0007140) | Gramene curators, 2007 (IC) | |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Mei-H-W et al., 2003 (SM) |
Database Cross-References (1)
SNPs (24,660)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr2 | 18,534,162 | 22,596,902 | ~160K SNPs x 20 accessions (McNally 2... | 1,571 | Search for SNPs |
| chr2 | 18,534,162 | 22,596,902 | '1536 chip' - 1311 SNPs x 395 rice ac... | 16 | Search for SNPs |
| chr2 | 18,534,162 | 22,596,902 | Huang X, et al, Nat Genetics 2010 Nov... | 11,345 | Search for SNPs |
| chr2 | 18,534,162 | 22,596,902 | RiceDiversity 44K SNP assay, 34 trait... | 11,345 | Search for SNPs |
| chr2 | 18,534,162 | 22,596,902 | RiceDiversity 44K SNP assay, 34 trait... | 383 | Search for SNPs |
