QTL Accession ID | AQCU064 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | PTHT | ||||
Trait Name | plant height | ||||
Published Symbol | |||||
Trait Synonym(s) |
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Trait Category | Vigor | ||||
Chromosome | 3 | ||||
Comments | This locus was found to have significant interaction with another locus, AQCU065, based on phenotypic data of RIL population. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 25,128,239-27,128,592 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI Lem/Teq RI QTL 2001 | BNL6.32 | 3 | 190.5-209 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQCU064 | 3 | 190.5 | 209 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RZ474 | RFLP | Oryza sativa | qtl_marker |
To | C746 | RFLP | Oryza sativa | qtl_marker |
To | RG482 | RFLP | Oryza sativa | qtl_marker |
To | CDO337 | RFLP | Avena sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000207) | Mei-H-W et al., 2003 (IAGP) |
Plant Structure | (PO:0009006) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Mei-H-W et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr3 | 25,128,239 | 27,128,592 | ~160K SNPs x 20 accessions (McNally 2... | 456 | Search for SNPs |
chr3 | 25,128,239 | 27,128,592 | '1536 chip' - 1311 SNPs x 395 rice ac... | 4 | Search for SNPs |
chr3 | 25,128,239 | 27,128,592 | Huang X, et al, Nat Genetics 2010 Nov... | 5,391 | Search for SNPs |
chr3 | 25,128,239 | 27,128,592 | RiceDiversity 44K SNP assay, 34 trait... | 5,391 | Search for SNPs |
chr3 | 25,128,239 | 27,128,592 | RiceDiversity 44K SNP assay, 34 trait... | 107 | Search for SNPs |