QTL Accession ID | AQCU054 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | DTHD | ||||
Trait Name | days to heading | ||||
Published Symbol | |||||
Trait Synonym(s) |
|
||||
Trait Category | Development | ||||
Chromosome | 8 | ||||
Comments | This locus was found to have significant interaction with another locus, AQCU055, based on phenotypic data of RIL population. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 8 | 8,923,052-8,924,004 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI Lem/Teq RI QTL 2001 | BNL6.32 | 8 | 46.1-52.1 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQCU054 | 8 | 46.1 | 52.1 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | CSU754 | RFLP | Zea mays subsp. mays | qtl_marker |
To | G104 | RFLP | Oryza sativa | qtl_marker |
To | C825 | RFLP | Oryza sativa | qtl_marker |
To | G1314 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000137) | Mei-H-W et al., 2003 (IAGP) |
Plant Structure | (PO:0009049) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Mei-H-W et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr8 | 8,923,052 | 8,924,004 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr8 | 8,923,052 | 8,924,004 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr8 | 8,923,052 | 8,924,004 | Huang X, et al, Nat Genetics 2010 Nov... | 4 | Search for SNPs |
chr8 | 8,923,052 | 8,924,004 | RiceDiversity 44K SNP assay, 34 trait... | 4 | Search for SNPs |
chr8 | 8,923,052 | 8,924,004 | RiceDiversity 44K SNP assay, 34 trait... | 0 |