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Oryza sativa QTL "AQCU048" (spikelet fertility)
| QTL Accession ID | AQCU048 | ||||||
|---|---|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
| Trait Symbol | SPKFRT | ||||||
| Trait Name | spikelet fertility | ||||||
| Published Symbol | QSf8 | ||||||
| Trait Synonym(s) |
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| Trait Category | Sterility or fertility | ||||||
| Chromosome | 8 | ||||||
| Comments | One main-effect QTL was detected based on the mean trait values of individual testcross hybrids of IR64F1s population (derived from crosses between the RILs and the tester, IR64). |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 8 | 13,927,893-20,650,257 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | IRRI Lem/Teq RI QTL 2001 | BNL6.32 | 8 | 72.6-131.4 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQCU048 | 8 | 72.6 | 131.4 |
Associated Markers (8)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | G2140 | RFLP | Oryza sativa | qtl_marker |
| To | C225 | RFLP | Oryza sativa | qtl_marker |
| To | G2132 | RFLP | Oryza sativa | qtl_marker |
| To | C1073 | RFLP | Oryza sativa | qtl_marker |
| To | RM223 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RZ323 | RFLP | Oryza sativa | qtl_marker |
| To | G1314 | RFLP | Oryza sativa | qtl_marker |
| To | RM210 | SSR | Oryza sativa Indica Group | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000180) | Mei-H-W et al., 2003 (IAGP) |
| Plant Structure | (PO:0009051) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Mei-H-W et al., 2003 (SM) |
Database Cross-References (1)
SNPs (37,040)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr8 | 13,927,893 | 20,650,257 | ~160K SNPs x 20 accessions (McNally 2... | 1,771 | Search for SNPs |
| chr8 | 13,927,893 | 20,650,257 | '1536 chip' - 1311 SNPs x 395 rice ac... | 17 | Search for SNPs |
| chr8 | 13,927,893 | 20,650,257 | Huang X, et al, Nat Genetics 2010 Nov... | 17,377 | Search for SNPs |
| chr8 | 13,927,893 | 20,650,257 | RiceDiversity 44K SNP assay, 34 trait... | 17,377 | Search for SNPs |
| chr8 | 13,927,893 | 20,650,257 | RiceDiversity 44K SNP assay, 34 trait... | 498 | Search for SNPs |
