QTL Accession ID | AQCU039 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||||||||
Trait Symbol | SPKNB | ||||||||||||||||
Trait Name | spikelet number | ||||||||||||||||
Published Symbol | QSn3 | ||||||||||||||||
Trait Synonym(s) |
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Trait Category | Yield | ||||||||||||||||
Chromosome | 3 | ||||||||||||||||
Comments | One main-effect QTL was detected based on phenotypic data of RIL population. Spikelet number per panicle was measured to evaluate spikelet number and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 30,313,472-34,925,301 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI Lem/Teq RI QTL 2001 | BNL6.32 | 3 | 255.2-301 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQCU039 | 3 | 255.2 | 301 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | G249 | RFLP | Oryza sativa | qtl_marker |
To | RM227 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM85 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RZ761 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000456) | Mei-H-W et al., 2003 (IAGP) |
Plant Structure | (PO:0009051) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Mei-H-W et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr3 | 30,313,472 | 34,925,301 | ~160K SNPs x 20 accessions (McNally 2... | 2,871 | Search for SNPs |
chr3 | 30,313,472 | 34,925,301 | '1536 chip' - 1311 SNPs x 395 rice ac... | 14 | Search for SNPs |
chr3 | 30,313,472 | 34,925,301 | Huang X, et al, Nat Genetics 2010 Nov... | 10,241 | Search for SNPs |
chr3 | 30,313,472 | 34,925,301 | RiceDiversity 44K SNP assay, 34 trait... | 10,241 | Search for SNPs |
chr3 | 30,313,472 | 34,925,301 | RiceDiversity 44K SNP assay, 34 trait... | 494 | Search for SNPs |