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Oryza sativa QTL "AQCU003" (days to heading)
| QTL Accession ID | AQCU003 | ||||
|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
| Trait Symbol | DTHD | ||||
| Trait Name | days to heading | ||||
| Published Symbol | QHd3 | ||||
| Trait Synonym(s) |
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| Trait Category | Development | ||||
| Chromosome | 3 | ||||
| Comments | One main-effect QTL was detected based on the mid-parental heterosis (HMP=F1-MP) of individual testcross hybrids of Z413F1s population (derived from crosses between the RILs and the tester, Zhong 413). |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 718,777-1,450,227 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | IRRI Lem/Teq RI QTL 2001 | BNL6.32 | 3 | 2.5-7.3 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQCU003 | 3 | 2.5 | 7.3 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | C515 | RFLP | Oryza sativa | qtl_marker |
| To | RG348 | RFLP | Oryza sativa | qtl_marker |
| To | RG104 | RFLP | Oryza sativa | qtl_marker |
| To | C636 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000137) | Mei-H-W et al., 2003 (IAGP) |
| Plant Structure | (PO:0009049) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Mei-H-W et al., 2003 (SM) |
Database Cross-References (1)
SNPs (1,498)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr3 | 718,777 | 1,450,227 | ~160K SNPs x 20 accessions (McNally 2... | 429 | Search for SNPs |
| chr3 | 718,777 | 1,450,227 | '1536 chip' - 1311 SNPs x 395 rice ac... | 5 | Search for SNPs |
| chr3 | 718,777 | 1,450,227 | Huang X, et al, Nat Genetics 2010 Nov... | 477 | Search for SNPs |
| chr3 | 718,777 | 1,450,227 | RiceDiversity 44K SNP assay, 34 trait... | 477 | Search for SNPs |
| chr3 | 718,777 | 1,450,227 | RiceDiversity 44K SNP assay, 34 trait... | 110 | Search for SNPs |
