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Oryza sativa QTL "AQCT004" (blast disease resistance)
| QTL Accession ID | AQCT004 | ||||||
|---|---|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
| Trait Symbol | BLRS | ||||||
| Trait Name | blast disease resistance | ||||||
| Published Symbol | Pi-27(t) | ||||||
| Trait Synonym(s) |
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| Trait Category | Biotic stress | ||||||
| Chromosome | 6 | ||||||
| Comments | This locus conferring resistance to blast isolate, CH66, was mapped at chromosomal location where no resistance gene had been previously reported. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 6,283,401-6,928,661 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | CIRAD IR64/Azu DH QTL 2003 | BNL6.32 | 6 | 51.9-51.9 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQCT004 | 6 | 51.9 | 51.9 |
Associated Markers (3)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | UMC68 | RFLP | Zea mays subsp. mays | qtl_marker |
| To | RG213 | RFLP | Oryza sativa | qtl_marker |
| To | RZ667 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (7)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000074) | Sallaud-C et al., 2003 (IAGP) |
| Plant Structure | (PO:0009025) | Sallaud-C et al., 2003 (SM) |
| Plant Growth and Development Stage | (PO:0007134) | Sallaud-C et al., 2003 (SM) |
| (PO:0007130) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007139) | Sallaud-C et al., 2003 (SM) |
| Environment | (EO:0007218) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Sallaud-C et al., 2003 (SM) |
Database Cross-References (1)
SNPs (5,632)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr6 | 6,283,401 | 6,928,661 | ~160K SNPs x 20 accessions (McNally 2... | 408 | Search for SNPs |
| chr6 | 6,283,401 | 6,928,661 | '1536 chip' - 1311 SNPs x 395 rice ac... | 4 | Search for SNPs |
| chr6 | 6,283,401 | 6,928,661 | Huang X, et al, Nat Genetics 2010 Nov... | 2,569 | Search for SNPs |
| chr6 | 6,283,401 | 6,928,661 | RiceDiversity 44K SNP assay, 34 trait... | 2,569 | Search for SNPs |
| chr6 | 6,283,401 | 6,928,661 | RiceDiversity 44K SNP assay, 34 trait... | 82 | Search for SNPs |
