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Oryza sativa QTL "AQCS003" (ultraviolet-b resistance)
| QTL Accession ID | AQCS003 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | UVBRS |
| Trait Name | ultraviolet-b resistance |
| Published Symbol | |
| Trait Synonym(s) | UV-B resistance |
| Trait Category | Abiotic stress |
| Chromosome | 10 |
| Comments | The relative fresh weight of aerial parts (RFW) was measured to evaluate ultraviolet-B (UV-B) resistance and used for QTL analysis. The existence of this QTL was confirmed using chromosome segment substitution lines. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 10 | 3,778,632-12,686,480 bp | View Comparative Map | |||
|
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 10 | 7.6-23.1 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQCS003 | 10 | 7.6 | 23.1 |
Associated Markers (46)
Associated Genes (0)
Associated Ontologies (10)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000601) | Sato-T et al., 2003 (IAGP) |
| Plant Structure | (PO:0020039) | Sato-T et al., 2003 (SM) |
| (PO:0000003) | Gramene curators, 2007 (IC) | |
| (PO:0009011) | Gramene curators, 2007 (IC) | |
| Plant Growth and Development Stage | (PO:0007134) | Sato-T et al., 2003 (SM) |
| (PO:0007033) | Gramene curators, 2007 (IC) | |
| (PO:0009012) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007001) | Sato-T et al., 2003 (SM) |
| Environment | (EO:0007001) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Sato-T et al., 2003 (SM) |
Database Cross-References (1)
SNPs (41,443)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr10 | 3,778,632 | 12,686,480 | ~160K SNPs x 20 accessions (McNally 2... | 2,092 | Search for SNPs |
| chr10 | 3,778,632 | 12,686,480 | '1536 chip' - 1311 SNPs x 395 rice ac... | 29 | Search for SNPs |
| chr10 | 3,778,632 | 12,686,480 | Huang X, et al, Nat Genetics 2010 Nov... | 19,389 | Search for SNPs |
| chr10 | 3,778,632 | 12,686,480 | RiceDiversity 44K SNP assay, 34 trait... | 19,389 | Search for SNPs |
| chr10 | 3,778,632 | 12,686,480 | RiceDiversity 44K SNP assay, 34 trait... | 544 | Search for SNPs |
