QTL Accession ID | AQCS001 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | UVBRS |
Trait Name | ultraviolet-b resistance |
Published Symbol | |
Trait Synonym(s) | UV-B resistance |
Trait Category | Abiotic stress |
Chromosome | 1 |
Comments | The relative fresh weight of aerial parts (RFW) was measured to evaluate ultraviolet-B (UV-B) resistance and used for QTL analysis. The existence of this QTL was confirmed using chromosome segment substitution lines. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 19,114,225-42,254,617 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 1 | 113.3-136.9 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQCS001 | 1 | 113.3 | 136.9 |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000601) | Sato-T et al., 2003 (IAGP) |
Plant Structure | (PO:0020039) | Sato-T et al., 2003 (SM) |
(PO:0000003) | Gramene curators, 2007 (IC) | |
(PO:0009011) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007134) | Sato-T et al., 2003 (SM) |
(PO:0007033) | Gramene curators, 2007 (IC) | |
(PO:0009012) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007001) | Sato-T et al., 2003 (SM) |
Environment | (EO:0007001) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Sato-T et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr1 | 19,114,225 | 42,254,617 | ~160K SNPs x 20 accessions (McNally 2... | 15,754 | Search for SNPs |
chr1 | 19,114,225 | 42,254,617 | '1536 chip' - 1311 SNPs x 395 rice ac... | 81 | Search for SNPs |
chr1 | 19,114,225 | 42,254,617 | Huang X, et al, Nat Genetics 2010 Nov... | 48,515 | Search for SNPs |
chr1 | 19,114,225 | 42,254,617 | RiceDiversity 44K SNP assay, 34 trait... | 48,515 | Search for SNPs |
chr1 | 19,114,225 | 42,254,617 | RiceDiversity 44K SNP assay, 34 trait... | 3,049 | Search for SNPs |