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Oryza sativa QTL "AQCR002" (grain yield)
| QTL Accession ID | AQCR002 | ||||
|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
| Trait Symbol | GRYLD | ||||
| Trait Name | grain yield | ||||
| Published Symbol | yld2.1 | ||||
| Trait Synonym(s) |
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| Trait Category | Yield | ||||
| Chromosome | 2 | ||||
| Comments | O. rufipogon-derived QTL. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 28,688,829-35,011,706 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | Cornell V20A/Oruf QTL 1998 | BNL6.32 | 2 | 100.3-137.2 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQCR002 | 2 | 100.3 | 137.2 |
Associated Markers (6)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RZ58 | RFLP | Oryza sativa | qtl_marker |
| To | RM240 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RG256 | RFLP | Oryza sativa | qtl_marker |
| To | RZ913 | RFLP | Oryza sativa | qtl_marker |
| To | CDO32 | RFLP | Avena sativa | qtl_marker |
| To | RG520 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000396) | Xiao-J et al., 1996 (IAGP) |
| Plant Structure | (PO:0009001) | Xiao-J et al., 1996 (SM) |
| Plant Growth and Development Stage | (PO:0007038 ) | Xiao-J et al., 1996 (SM) |
| Growth Stage | (GRO:0007045) | Xiao-J et al., 1996 (SM) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Xiao-J et al., 1996 (SM) |
Database Cross-References (1)
SNPs (24,350)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr2 | 28,688,829 | 35,011,706 | ~160K SNPs x 20 accessions (McNally 2... | 3,412 | Search for SNPs |
| chr2 | 28,688,829 | 35,011,706 | '1536 chip' - 1311 SNPs x 395 rice ac... | 19 | Search for SNPs |
| chr2 | 28,688,829 | 35,011,706 | Huang X, et al, Nat Genetics 2010 Nov... | 10,064 | Search for SNPs |
| chr2 | 28,688,829 | 35,011,706 | RiceDiversity 44K SNP assay, 34 trait... | 10,064 | Search for SNPs |
| chr2 | 28,688,829 | 35,011,706 | RiceDiversity 44K SNP assay, 34 trait... | 791 | Search for SNPs |
