QTL Accession ID | AQCN014 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | PTHT | ||||
Trait Name | plant height | ||||
Published Symbol | |||||
Trait Synonym(s) |
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Trait Category | Vigor | ||||
Chromosome | 12 | ||||
Comments | Plant height 30 weeks after seeding was measured and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 12 | 23,603,156-26,017,884 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI IR64/Azu DH QTL 2003 | BNL6.32 | 12 | 81.2-104.2 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQCN014 | 12 | 81.2 | 104.2 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | CDO344 | RFLP | Avena sativa | qtl_marker |
To | RG901 | RFLP | Oryza sativa | qtl_marker |
To | RG463 | RFLP | Oryza sativa | qtl_marker |
To | RG958 | RFLP | Oryza sativa | qtl_marker |
To | RG457 | RFLP | Oryza sativa | qtl_marker |
To | RG181 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000207) | Albar-L et al., 1998 (IAGP) |
Plant Structure | (PO:0009006) | Albar-L et al., 1998 (SM) |
Plant Growth and Development Stage | (PO:0007038 ) | Albar-L et al., 1998 (SM) |
(PO:0007130) | Gramene curators, 2007 (IC) | |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007045) | Albar-L et al., 1998 (SM) |
(GRO:0007139) | Gramene curators, 2007 (IC) | |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Albar-L et al., 1998 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr12 | 23,603,156 | 26,017,884 | ~160K SNPs x 20 accessions (McNally 2... | 1,372 | Search for SNPs |
chr12 | 23,603,156 | 26,017,884 | '1536 chip' - 1311 SNPs x 395 rice ac... | 11 | Search for SNPs |
chr12 | 23,603,156 | 26,017,884 | B-Gross/J-Yulin SNP Pi-ta study in AA... | 0 | |
chr12 | 23,603,156 | 26,017,884 | Huang X, et al, Nat Genetics 2010 Nov... | 5,265 | Search for SNPs |
chr12 | 23,603,156 | 26,017,884 | RiceDiversity 44K SNP assay, 34 trait... | 5,265 | Search for SNPs |
chr12 | 23,603,156 | 26,017,884 | RiceDiversity 44K SNP assay, 34 trait... | 252 | Search for SNPs |