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Oryza sativa QTL "AQCN013" (grain yield per plant)
| QTL Accession ID | AQCN013 | ||||
|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
| Trait Symbol | GRYLDPPL | ||||
| Trait Name | grain yield per plant | ||||
| Published Symbol | |||||
| Trait Synonym(s) |
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| Trait Category | Yield | ||||
| Chromosome | 9 | ||||
| Comments |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 9 | 3,759,711-15,547,564 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | IRRI IR64/Azu DH QTL 2003 | BNL6.32 | 9 | 16.1-60.8 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQCN013 | 9 | 16.1 | 60.8 |
Associated Markers (8)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | CDO590 | RFLP | Avena sativa | qtl_marker |
| To | S1AS1I3 | RFLP | Oryza sativa | qtl_marker |
| To | r15 | RFLP | Oryza sativa | qtl_marker |
| To | G103 | RFLP | Oryza sativa | qtl_marker |
| To | RZ206 | RFLP | Oryza sativa | qtl_marker |
| To | RZ422 | RFLP | Oryza sativa | qtl_marker |
| To | RG757 | RFLP | Oryza sativa | qtl_marker |
| To | RZ228 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000449) | Albar-L et al., 1998 (IAGP) |
| Plant Structure | (PO:0009001) | Albar-L et al., 1998 (SM) |
| Plant Growth and Development Stage | (PO:0007038 ) | Albar-L et al., 1998 (SM) |
| Growth Stage | (GRO:0007045) | Albar-L et al., 1998 (SM) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Albar-L et al., 1998 (SM) |
Database Cross-References (1)
SNPs (58,641)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr9 | 3,759,711 | 15,547,564 | ~160K SNPs x 20 accessions (McNally 2... | 3,597 | Search for SNPs |
| chr9 | 3,759,711 | 15,547,564 | '1536 chip' - 1311 SNPs x 395 rice ac... | 54 | Search for SNPs |
| chr9 | 3,759,711 | 15,547,564 | Huang X, et al, Nat Genetics 2010 Nov... | 27,003 | Search for SNPs |
| chr9 | 3,759,711 | 15,547,564 | RiceDiversity 44K SNP assay, 34 trait... | 27,003 | Search for SNPs |
| chr9 | 3,759,711 | 15,547,564 | RiceDiversity 44K SNP assay, 34 trait... | 984 | Search for SNPs |
