QTL Accession ID | AQCN005 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | DTHD | ||||
Trait Name | days to heading | ||||
Published Symbol | |||||
Trait Synonym(s) |
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Trait Category | Development | ||||
Chromosome | 3 | ||||
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 484,860-5,182,350 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI IR64/Azu DH QTL 2003 | BNL6.32 | 3 | 0-20.4 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQCN005 | 3 | 0 | 20.4 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG104 | RFLP | Oryza sativa | qtl_marker |
To | RG348 | RFLP | Oryza sativa | qtl_marker |
To | RZ329 | RFLP | Oryza sativa | qtl_marker |
To | RZ892 | RFLP | Oryza sativa | qtl_marker |
To | RG100 | RFLP | Oryza sativa | qtl_marker |
To | RG191 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000137) | Albar-L et al., 1998 (IAGP) |
Plant Structure | (PO:0009049) | Albar-L et al., 1998 (SM) |
Plant Growth and Development Stage | (PO:0007041) | Albar-L et al., 1998 (SM) |
(PO:0007130) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007044) | Albar-L et al., 1998 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Albar-L et al., 1998 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr3 | 484,860 | 5,182,350 | ~160K SNPs x 20 accessions (McNally 2... | 2,905 | Search for SNPs |
chr3 | 484,860 | 5,182,350 | '1536 chip' - 1311 SNPs x 395 rice ac... | 19 | Search for SNPs |
chr3 | 484,860 | 5,182,350 | Huang X, et al, Nat Genetics 2010 Nov... | 6,019 | Search for SNPs |
chr3 | 484,860 | 5,182,350 | RiceDiversity 44K SNP assay, 34 trait... | 6,019 | Search for SNPs |
chr3 | 484,860 | 5,182,350 | RiceDiversity 44K SNP assay, 34 trait... | 632 | Search for SNPs |