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Oryza sativa QTL "AQCL004" (salt sensitivity)
| QTL Accession ID | AQCL004 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | SALTSN |
| Trait Name | salt sensitivity |
| Published Symbol | |
| Trait Synonym(s) |
saline sensitivity salt tolerance |
| Trait Category | Abiotic stress |
| Chromosome | 6 |
| Comments | Seedling survival days (SD) was measured to evaluate salt tolerance in rice and used for QTL analysis. This QTL has significant epistatic interaction with another QTL (AQCL003). |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 22,862,400-22,862,821 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | CNRRI Tes/CB QTL 1998 | BNL6.32 | 6b | 60.8-60.8 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQCL004 | 6 | 60.8 | 60.8 |
Associated Markers (2)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RG716 | RFLP | Oryza sativa | qtl_marker |
| To | RG1028 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000429) | Lin-H-X et al., 1998 (IAGP) |
| Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
| (PO:0009011) | Gramene curators, 2007 (IC) | |
| Plant Growth and Development Stage | (PO:0007033) | Gramene curators, 2007 (IC) |
| (PO:0009012) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007185) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Lin-H-X et al., 1998 (SM) |
Database Cross-References (1)
SNPs (2)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr6 | 22,862,400 | 22,862,821 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
| chr6 | 22,862,400 | 22,862,821 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr6 | 22,862,400 | 22,862,821 | Huang X, et al, Nat Genetics 2010 Nov... | 1 | Search for SNPs |
| chr6 | 22,862,400 | 22,862,821 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |
| chr6 | 22,862,400 | 22,862,821 | RiceDiversity 44K SNP assay, 34 trait... | 0 |
