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Oryza sativa QTL "AQCI008" (phosphorus sensitivity)
| QTL Accession ID | AQCI008 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | PHOSN |
| Trait Name | phosphorus sensitivity |
| Published Symbol | |
| Trait Synonym(s) |
phosphorus deficiency phosphorus deficiency tolerance |
| Trait Category | Abiotic stress |
| Chromosome | 3 |
| Comments | Shoot dry weight was measured to evaluate phosphorus deficiency tolerance and used for QTL analysis. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 6,753,341-10,322,897 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 3 | 31.3-46.6 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQCI008 | 3 | 31.3 | 46.6 |
Associated Markers (45)
Associated Genes (0)
Associated Ontologies (11)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000102) | Wissuwa-M et al., 1998 (IAGP) |
| Plant Structure | (PO:0006343) | Wissuwa-M et al., 1998 (SM) |
| (PO:0000003) | Gramene curators, 2007 (IC) | |
| (PO:0009011) | Gramene curators, 2007 (IC) | |
| Plant Growth and Development Stage | (PO:0007110) | Wissuwa-M et al., 1998 (SM) |
| (PO:0007038) | Wissuwa-M et al., 1998 (SM) | |
| (PO:0007033) | Gramene curators, 2007 (IC) | |
| (PO:0009012) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007001) | Wissuwa-M et al., 1998 (SM) |
| Environment | (EO:0007397) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Wissuwa-M et al., 1998 (SM) |
Database Cross-References (1)
SNPs (19,342)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr3 | 6,753,341 | 10,322,897 | ~160K SNPs x 20 accessions (McNally 2... | 1,491 | Search for SNPs |
| chr3 | 6,753,341 | 10,322,897 | '1536 chip' - 1311 SNPs x 395 rice ac... | 15 | Search for SNPs |
| chr3 | 6,753,341 | 10,322,897 | Huang X, et al, Nat Genetics 2010 Nov... | 8,716 | Search for SNPs |
| chr3 | 6,753,341 | 10,322,897 | RiceDiversity 44K SNP assay, 34 trait... | 8,716 | Search for SNPs |
| chr3 | 6,753,341 | 10,322,897 | RiceDiversity 44K SNP assay, 34 trait... | 404 | Search for SNPs |
