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Oryza sativa QTL "AQCI006" (phosphorus sensitivity)
| QTL Accession ID | AQCI006 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | PHOSN |
| Trait Name | phosphorus sensitivity |
| Published Symbol | |
| Trait Synonym(s) |
phosphorus deficiency phosphorus deficiency tolerance |
| Trait Category | Abiotic stress |
| Chromosome | 4 |
| Comments | P-use efficiency (g dry weight /mg P taken up) was calculated to evaluate phosphorus deficiency tolerance and used for QTL analysis. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 88,362-4,439,573 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 4 | 0-10.7 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQCI006 | 4 | 0 | 10.7 |
Associated Markers (25)
Associated Genes (0)
Associated Ontologies (11)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000102) | Wissuwa-M et al., 1998 (IAGP) |
| Plant Structure | (PO:0006343) | Wissuwa-M et al., 1998 (SM) |
| (PO:0000003) | Gramene curators, 2007 (IC) | |
| (PO:0009011) | Gramene curators, 2007 (IC) | |
| Plant Growth and Development Stage | (PO:0007110) | Wissuwa-M et al., 1998 (SM) |
| (PO:0007038) | Wissuwa-M et al., 1998 (SM) | |
| (PO:0007033) | Gramene curators, 2007 (IC) | |
| (PO:0009012) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007001) | Wissuwa-M et al., 1998 (SM) |
| Environment | (EO:0007397) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Wissuwa-M et al., 1998 (SM) |
Database Cross-References (1)
SNPs (18,585)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr4 | 88,362 | 4,439,573 | ~160K SNPs x 20 accessions (McNally 2... | 1,817 | Search for SNPs |
| chr4 | 88,362 | 4,439,573 | '1536 chip' - 1311 SNPs x 395 rice ac... | 21 | Search for SNPs |
| chr4 | 88,362 | 4,439,573 | Huang X, et al, Nat Genetics 2010 Nov... | 8,193 | Search for SNPs |
| chr4 | 88,362 | 4,439,573 | RiceDiversity 44K SNP assay, 34 trait... | 8,193 | Search for SNPs |
| chr4 | 88,362 | 4,439,573 | RiceDiversity 44K SNP assay, 34 trait... | 361 | Search for SNPs |
