QTL Accession ID | AQCI005 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | PHOSN |
Trait Name | phosphorus sensitivity |
Published Symbol | |
Trait Synonym(s) |
phosphorus deficiency phosphorus deficiency tolerance |
Trait Category | Abiotic stress |
Chromosome | 2 |
Comments | P-use efficiency (g dry weight /mg P taken up) was calculated to evaluate phosphorus deficiency tolerance and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 8,984,645-18,496,476 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 2 | 42.1-62.2 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQCI005 | 2 | 42.1 | 62.2 |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000102) | Wissuwa-M et al., 1998 (IAGP) |
Plant Structure | (PO:0006343) | Wissuwa-M et al., 1998 (SM) |
(PO:0000003) | Gramene curators, 2007 (IC) | |
(PO:0009011) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007110) | Wissuwa-M et al., 1998 (SM) |
(PO:0007038) | Wissuwa-M et al., 1998 (SM) | |
(PO:0007033) | Gramene curators, 2007 (IC) | |
(PO:0009012) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007001) | Wissuwa-M et al., 1998 (SM) |
Environment | (EO:0007397) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Wissuwa-M et al., 1998 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr2 | 8,984,645 | 18,496,476 | ~160K SNPs x 20 accessions (McNally 2... | 2,847 | Search for SNPs |
chr2 | 8,984,645 | 18,496,476 | '1536 chip' - 1311 SNPs x 395 rice ac... | 19 | Search for SNPs |
chr2 | 8,984,645 | 18,496,476 | Huang X, et al, Nat Genetics 2010 Nov... | 15,638 | Search for SNPs |
chr2 | 8,984,645 | 18,496,476 | RiceDiversity 44K SNP assay, 34 trait... | 15,638 | Search for SNPs |
chr2 | 8,984,645 | 18,496,476 | RiceDiversity 44K SNP assay, 34 trait... | 719 | Search for SNPs |