QTL Accession ID | AQCI003 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | PHOSN |
Trait Name | phosphorus sensitivity |
Published Symbol | |
Trait Synonym(s) |
phosphorus deficiency phosphorus deficiency tolerance |
Trait Category | Abiotic stress |
Chromosome | 10 |
Comments | Total P uptake (the product of dry weight and tissue-P concentration) was calculated to evaluate phosphorus deficiency tolerance and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 10 | 7,639,733-14,271,753 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 10 | 15.7-30.2 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQCI003 | 10 | 15.7 | 30.2 |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000102) | Wissuwa-M et al., 1998 (IAGP) |
Plant Structure | (PO:0006343) | Wissuwa-M et al., 1998 (SM) |
(PO:0000003) | Gramene curators, 2007 (IC) | |
(PO:0009011) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007110) | Wissuwa-M et al., 1998 (SM) |
(PO:0007038) | Wissuwa-M et al., 1998 (SM) | |
(PO:0007033) | Gramene curators, 2007 (IC) | |
(PO:0009012) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007001) | Wissuwa-M et al., 1998 (SM) |
Environment | (EO:0007397) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Wissuwa-M et al., 1998 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr10 | 7,639,733 | 14,271,753 | ~160K SNPs x 20 accessions (McNally 2... | 1,253 | Search for SNPs |
chr10 | 7,639,733 | 14,271,753 | '1536 chip' - 1311 SNPs x 395 rice ac... | 20 | Search for SNPs |
chr10 | 7,639,733 | 14,271,753 | Huang X, et al, Nat Genetics 2010 Nov... | 14,349 | Search for SNPs |
chr10 | 7,639,733 | 14,271,753 | RiceDiversity 44K SNP assay, 34 trait... | 14,349 | Search for SNPs |
chr10 | 7,639,733 | 14,271,753 | RiceDiversity 44K SNP assay, 34 trait... | 392 | Search for SNPs |