QTL Accession ID | AQCG003 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | MALERF |
Trait Name | male fertility restoration |
Published Symbol | qRf-10 |
Trait Synonym(s) | Male fertility restoration in F1 hybrids |
Trait Category | Sterility or fertility |
Chromosome | 10 |
Comments | The QTL was detected using phenotypic data from a population consisting of 227 testcrosses of Zhenshan97A X (Zhenshan97B/Milyang46) F6. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 10 | 19,094,996-21,777,338 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNRRI Zh97B/Mil46 RI QTL 2002 | BNL6.32 | 10 | 60.4-86.8 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQCG003 | 10 | 60.4 | 86.8 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RZ811 | RFLP | Oryza sativa | qtl_marker |
To | RZ583 | RFLP | Oryza sativa | qtl_marker |
To | RG561 | RFLP | Oryza sativa | qtl_marker |
To | RZ861 | RFLP | Oryza sativa | qtl_marker |
To | RM171 | SSR | Oryza sativa | qtl_marker |
To | RM228 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000308) | Zhuang-J-Y et al., 2001 (IAGP) |
Plant Structure | (PO:0009066) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007016) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007151) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Zhuang-J-Y et al., 2001 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr10 | 19,094,996 | 21,777,338 | ~160K SNPs x 20 accessions (McNally 2... | 965 | Search for SNPs |
chr10 | 19,094,996 | 21,777,338 | '1536 chip' - 1311 SNPs x 395 rice ac... | 8 | Search for SNPs |
chr10 | 19,094,996 | 21,777,338 | Huang X, et al, Nat Genetics 2010 Nov... | 2,234 | Search for SNPs |
chr10 | 19,094,996 | 21,777,338 | RiceDiversity 44K SNP assay, 34 trait... | 2,234 | Search for SNPs |
chr10 | 19,094,996 | 21,777,338 | RiceDiversity 44K SNP assay, 34 trait... | 235 | Search for SNPs |