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Oryza sativa QTL "AQCG002" (male fertility restoration)
| QTL Accession ID | AQCG002 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | MALERF |
| Trait Name | male fertility restoration |
| Published Symbol | qRf-7 |
| Trait Synonym(s) | Male fertility restoration in F1 hybrids |
| Trait Category | Sterility or fertility |
| Chromosome | 7 |
| Comments | The QTL was detected using phenotypic data from a population consisting of 227 testcrosses of Zhenshan97A X (Zhenshan97B/Milyang46) F6. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 7 | 24,622,352-28,209,648 bp | View Comparative Map | |||
|
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | CNRRI Zh97B/Mil46 RI QTL 2002 | BNL6.32 | 7 | 39.2-71.7 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQCG002 | 7 | 39.2 | 71.7 |
Associated Markers (5)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RZ395 | RFLP | Oryza sativa | qtl_marker |
| To | RM18 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RZ989 | RFLP | Oryza sativa | qtl_marker |
| To | RG650 | RFLP | Oryza sativa | qtl_marker |
| To | RM248 | SSR | Oryza sativa Indica Group | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000308) | Zhuang-J-Y et al., 2001 (IAGP) |
| Plant Structure | (PO:0009066) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007016) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007151) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Zhuang-J-Y et al., 2001 (SM) |
Database Cross-References (1)
SNPs (18,404)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr7 | 24,622,352 | 28,209,648 | ~160K SNPs x 20 accessions (McNally 2... | 1,119 | Search for SNPs |
| chr7 | 24,622,352 | 28,209,648 | '1536 chip' - 1311 SNPs x 395 rice ac... | 20 | Search for SNPs |
| chr7 | 24,622,352 | 28,209,648 | Huang X, et al, Nat Genetics 2010 Nov... | 8,457 | Search for SNPs |
| chr7 | 24,622,352 | 28,209,648 | RiceDiversity 44K SNP assay, 34 trait... | 8,457 | Search for SNPs |
| chr7 | 24,622,352 | 28,209,648 | RiceDiversity 44K SNP assay, 34 trait... | 351 | Search for SNPs |
