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Oryza sativa QTL "AQCF039" (1000-seed weight)
| QTL Accession ID | AQCF039 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||
| Trait Symbol | TSDWT | ||||||||||
| Trait Name | 1000-seed weight | ||||||||||
| Published Symbol | |||||||||||
| Trait Synonym(s) |
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| Trait Category | Yield | ||||||||||
| Chromosome | 6 | ||||||||||
| Comments | The QTL was detected using phenotype data from RIL population. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 2,560,318-6,023,977 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | CNRRI Zh97B/Mil46 RI QTL 2002 | BNL6.32 | 6 | 24.1-60 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQCF039 | 6 | 24.1 | 60 |
Associated Markers (11)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RZ398 | RFLP | Oryza sativa | qtl_marker |
| To | RM204 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM225 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM197 | SSR | Oryza sativa Japonica Group | qtl_marker |
| To | RZ516 | RFLP | Oryza sativa | qtl_marker |
| To | RM217 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RZ450 | RFLP | Oryza sativa | qtl_marker |
| To | RZ588 | RFLP | Oryza sativa | qtl_marker |
| To | RG138 | RFLP | Oryza sativa | qtl_marker |
| To | R1962 | RFLP | Oryza sativa | qtl_marker |
| To | RM253 | SSR | Oryza sativa Indica Group | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000382) | Zhuang-J-Y et al., 2001 (IAGP) |
| Plant Structure | (PO:0009010) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007038) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007045) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Zhuang-J-Y et al., 2001 (SM) |
Database Cross-References (1)
SNPs (20,108)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr6 | 2,560,318 | 6,023,977 | ~160K SNPs x 20 accessions (McNally 2... | 1,885 | Search for SNPs |
| chr6 | 2,560,318 | 6,023,977 | '1536 chip' - 1311 SNPs x 395 rice ac... | 17 | Search for SNPs |
| chr6 | 2,560,318 | 6,023,977 | Huang X, et al, Nat Genetics 2010 Nov... | 8,893 | Search for SNPs |
| chr6 | 2,560,318 | 6,023,977 | RiceDiversity 44K SNP assay, 34 trait... | 8,893 | Search for SNPs |
| chr6 | 2,560,318 | 6,023,977 | RiceDiversity 44K SNP assay, 34 trait... | 420 | Search for SNPs |
