QTL Accession ID | AQCF013 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||
Trait Symbol | TSDWT | ||||||||||
Trait Name | 1000-seed weight | ||||||||||
Published Symbol | |||||||||||
Trait Synonym(s) |
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Trait Category | Yield | ||||||||||
Chromosome | 10 | ||||||||||
Comments | The QTL was detected using phenotype data from F2 population. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 10 | 19,094,996-21,777,338 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNRRI Zh97B/Mil46 RI QTL 2002 | BNL6.32 | 10 | 60.4-86.8 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQCF013 | 10 | 60.4 | 86.8 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RZ811 | RFLP | Oryza sativa | qtl_marker |
To | RZ583 | RFLP | Oryza sativa | qtl_marker |
To | RG561 | RFLP | Oryza sativa | qtl_marker |
To | RZ861 | RFLP | Oryza sativa | qtl_marker |
To | RM171 | SSR | Oryza sativa | qtl_marker |
To | RM228 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000382) | Zhuang-J-Y et al., 2001 (IAGP) |
Plant Structure | (PO:0009010) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007038) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007045) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Zhuang-J-Y et al., 2001 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr10 | 19,094,996 | 21,777,338 | ~160K SNPs x 20 accessions (McNally 2... | 965 | Search for SNPs |
chr10 | 19,094,996 | 21,777,338 | '1536 chip' - 1311 SNPs x 395 rice ac... | 8 | Search for SNPs |
chr10 | 19,094,996 | 21,777,338 | Huang X, et al, Nat Genetics 2010 Nov... | 2,234 | Search for SNPs |
chr10 | 19,094,996 | 21,777,338 | RiceDiversity 44K SNP assay, 34 trait... | 2,234 | Search for SNPs |
chr10 | 19,094,996 | 21,777,338 | RiceDiversity 44K SNP assay, 34 trait... | 235 | Search for SNPs |