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Oryza sativa QTL "AQCE048" (secondary branch)
| QTL Accession ID | AQCE048 | ||||
|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
| Trait Symbol | SBRNB | ||||
| Trait Name | secondary branch | ||||
| Published Symbol | QSbn4b | ||||
| Trait Synonym(s) |
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| Trait Category | Anatomy | ||||
| Chromosome | 4 | ||||
| Comments |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 28,574,802-29,061,127 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | IRRI Lem/Teq RI QTL 2001 | BNL6.32 | 4 | 100-105.4 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQCE048 | 4 | 100 | 105.4 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RM303 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM317 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM252 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM255 | SSR | Oryza sativa Indica Group | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000557) | Xu-J-L et al., 2001 (IAGP) |
| Plant Structure | (PO:0006322) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Xu-J-L et al., 2001 (SM) |
Database Cross-References (1)
SNPs (1,703)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr4 | 28,574,802 | 29,061,127 | ~160K SNPs x 20 accessions (McNally 2... | 185 | Search for SNPs |
| chr4 | 28,574,802 | 29,061,127 | '1536 chip' - 1311 SNPs x 395 rice ac... | 1 | Search for SNPs |
| chr4 | 28,574,802 | 29,061,127 | Huang X, et al, Nat Genetics 2010 Nov... | 736 | Search for SNPs |
| chr4 | 28,574,802 | 29,061,127 | RiceDiversity 44K SNP assay, 34 trait... | 736 | Search for SNPs |
| chr4 | 28,574,802 | 29,061,127 | RiceDiversity 44K SNP assay, 34 trait... | 45 | Search for SNPs |
