QTL Accession ID | AQCE043 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | SBRNB | ||||
Trait Name | secondary branch | ||||
Published Symbol | QSbn2 | ||||
Trait Synonym(s) |
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Trait Category | Anatomy | ||||
Chromosome | 2 | ||||
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 11,389,704-11,389,942 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI Lem/Teq RI QTL 2001 | BNL6.32 | 2 | 111.2-114.2 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQCE043 | 2 | 111.2 | 114.2 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM27 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM324 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RZ599 | RFLP | Oryza sativa | qtl_marker |
To | CDO718 | RFLP | Avena sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000557) | Xu-J-L et al., 2001 (IAGP) |
Plant Structure | (PO:0006322) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Xu-J-L et al., 2001 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr2 | 11,389,704 | 11,389,942 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr2 | 11,389,704 | 11,389,942 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr2 | 11,389,704 | 11,389,942 | Huang X, et al, Nat Genetics 2010 Nov... | 1 | Search for SNPs |
chr2 | 11,389,704 | 11,389,942 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |
chr2 | 11,389,704 | 11,389,942 | RiceDiversity 44K SNP assay, 34 trait... | 0 |