![[Home Page]](/images/icons/gramene_logo180new.jpg "[Home Page]"){kind=icon}
QTL Home |
Simple Search |
Power Search |
Help |
Tutorial |
FAQ
Oryza sativa QTL "AQCE040" (primary branch)
| QTL Accession ID | AQCE040 | ||||||
|---|---|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
| Trait Symbol | PBRNB | ||||||
| Trait Name | primary branch | ||||||
| Published Symbol | QPbn8c | ||||||
| Trait Synonym(s) |
|
||||||
| Trait Category | Anatomy | ||||||
| Chromosome | 8 | ||||||
| Comments |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 8 | 27,830,387-27,831,422 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | IRRI Lem/Teq RI QTL 2001 | BNL6.32 | 8 | 248.6-258.7 cM | View Comparative Map | |||
|
||||||||
QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQCE040 | 8 | 248.6 | 258.7 |
Associated Markers (3)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | R662 | RFLP | Oryza sativa | qtl_marker |
| To | RM264 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | G56 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000547) | Xu-J-L et al., 2001 (IAGP) |
| Plant Structure | (PO:0006321) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Xu-J-L et al., 2001 (SM) |
Database Cross-References (1)
SNPs (10)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr8 | 27,830,387 | 27,831,422 | ~160K SNPs x 20 accessions (McNally 2... | 1 | Search for SNPs |
| chr8 | 27,830,387 | 27,831,422 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr8 | 27,830,387 | 27,831,422 | Huang X, et al, Nat Genetics 2010 Nov... | 4 | Search for SNPs |
| chr8 | 27,830,387 | 27,831,422 | RiceDiversity 44K SNP assay, 34 trait... | 4 | Search for SNPs |
| chr8 | 27,830,387 | 27,831,422 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |
