QTL Accession ID | AQCE028 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | PBRLG |
Trait Name | primary branch length |
Published Symbol | QPbl5 |
Trait Synonym(s) | |
Trait Category | Anatomy |
Chromosome | 5 |
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 5 | 22,579,390-29,285,656 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI Lem/Teq RI QTL 2001 | BNL6.32 | 5 | 167.4-196.6 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQCE028 | 5 | 167.4 | 196.6 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | CDSR049 | RFLP | Saccharum officinarum | qtl_marker |
To | RG346 | RFLP | Oryza sativa | qtl_marker |
To | RM161 | SSR | Oryza sativa Japonica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000641) | Xu-J-L et al., 2001 (IAGP) |
Plant Structure | (PO:0006321) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Xu-J-L et al., 2001 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr5 | 22,579,390 | 29,285,656 | ~160K SNPs x 20 accessions (McNally 2... | 4,829 | Search for SNPs |
chr5 | 22,579,390 | 29,285,656 | '1536 chip' - 1311 SNPs x 395 rice ac... | 27 | Search for SNPs |
chr5 | 22,579,390 | 29,285,656 | Huang X, et al, Nat Genetics 2010 Nov... | 6,706 | Search for SNPs |
chr5 | 22,579,390 | 29,285,656 | RiceDiversity 44K SNP assay, 34 trait... | 6,706 | Search for SNPs |
chr5 | 22,579,390 | 29,285,656 | RiceDiversity 44K SNP assay, 34 trait... | 818 | Search for SNPs |