QTL Accession ID | AQCE027 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | PBRLG |
Trait Name | primary branch length |
Published Symbol | QPbl4 |
Trait Synonym(s) | |
Trait Category | Anatomy |
Chromosome | 4 |
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 30,630,093-30,772,540 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI Lem/Teq RI QTL 2001 | BNL6.32 | 4 | 123.5-140 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQCE027 | 4 | 123.5 | 140 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM255 | SSR | Oryza sativa Indica Group | qtl_marker |
To | G379 | RFLP | Oryza sativa | qtl_marker |
To | RM317 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RG214 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000641) | Xu-J-L et al., 2001 (IAGP) |
Plant Structure | (PO:0006321) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Xu-J-L et al., 2001 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr4 | 30,630,093 | 30,772,540 | ~160K SNPs x 20 accessions (McNally 2... | 23 | Search for SNPs |
chr4 | 30,630,093 | 30,772,540 | '1536 chip' - 1311 SNPs x 395 rice ac... | 1 | Search for SNPs |
chr4 | 30,630,093 | 30,772,540 | Huang X, et al, Nat Genetics 2010 Nov... | 249 | Search for SNPs |
chr4 | 30,630,093 | 30,772,540 | RiceDiversity 44K SNP assay, 34 trait... | 249 | Search for SNPs |
chr4 | 30,630,093 | 30,772,540 | RiceDiversity 44K SNP assay, 34 trait... | 10 | Search for SNPs |