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Oryza sativa QTL "AQCC004" (stigma exsertion)
| QTL Accession ID | AQCC004 | ||||
|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
| Trait Symbol | STIEX | ||||
| Trait Name | stigma exsertion | ||||
| Published Symbol | qPEST-8 | ||||
| Trait Synonym(s) |
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| Trait Category | Anatomy | ||||
| Chromosome | 8 | ||||
| Comments | The QTL is related with key traits of classification for cultivated rice and common wild rice. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 8 | 26,354,970-28,173,143 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | CNCAU Orufi/Gui2 BC1 QTL 2001 | BNL6.32 | 8 | 102.5-113.4 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQCC004 | 8 | 102.5 | 113.4 |
Associated Markers (3)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | G1149 | RFLP | Oryza sativa | qtl_marker |
| To | R1963 | RFLP | Oryza sativa | qtl_marker |
| To | G56 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000044) | Li-C et al., 2001 (IAGP) |
| Plant Structure | (PO:0009073) | Li-C et al., 2001 (SM) |
| Plant Growth and Development Stage | (PO:0007016) | Li-C et al., 2001 (SM) |
| Growth Stage | (GRO:0007151) | Li-C et al., 2001 (SM) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Li-C et al., 2001 (SM) |
Database Cross-References (1)
SNPs (8,797)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr8 | 26,354,970 | 28,173,143 | ~160K SNPs x 20 accessions (McNally 2... | 650 | Search for SNPs |
| chr8 | 26,354,970 | 28,173,143 | '1536 chip' - 1311 SNPs x 395 rice ac... | 9 | Search for SNPs |
| chr8 | 26,354,970 | 28,173,143 | Huang X, et al, Nat Genetics 2010 Nov... | 3,974 | Search for SNPs |
| chr8 | 26,354,970 | 28,173,143 | RiceDiversity 44K SNP assay, 34 trait... | 3,974 | Search for SNPs |
| chr8 | 26,354,970 | 28,173,143 | RiceDiversity 44K SNP assay, 34 trait... | 190 | Search for SNPs |
