QTL Accession ID | AQCC003 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | STIEX | ||||
Trait Name | stigma exsertion | ||||
Published Symbol | qPEST-5 | ||||
Trait Synonym(s) |
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Trait Category | Anatomy | ||||
Chromosome | 5 | ||||
Comments | The QTL is related with key traits of classification for cultivated rice and common wild rice. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 5 | 18,955,696-20,626,831 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNCAU Orufi/Gui2 BC1 QTL 2001 | BNL6.32 | 5 | 69.9-77.5 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQCC003 | 5 | 69.9 | 77.5 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | R2289 | RFLP | Oryza sativa | qtl_marker |
To | R1553 | RFLP | Oryza sativa | qtl_marker |
To | R566 | RFLP | Oryza sativa | qtl_marker |
To | C425 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000044) | Li-C et al., 2001 (IAGP) |
Plant Structure | (PO:0009073) | Li-C et al., 2001 (SM) |
Plant Growth and Development Stage | (PO:0007016) | Li-C et al., 2001 (SM) |
Growth Stage | (GRO:0007151) | Li-C et al., 2001 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Li-C et al., 2001 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr5 | 18,955,696 | 20,626,831 | ~160K SNPs x 20 accessions (McNally 2... | 962 | Search for SNPs |
chr5 | 18,955,696 | 20,626,831 | '1536 chip' - 1311 SNPs x 395 rice ac... | 6 | Search for SNPs |
chr5 | 18,955,696 | 20,626,831 | Huang X, et al, Nat Genetics 2010 Nov... | 3,137 | Search for SNPs |
chr5 | 18,955,696 | 20,626,831 | RiceDiversity 44K SNP assay, 34 trait... | 3,137 | Search for SNPs |
chr5 | 18,955,696 | 20,626,831 | RiceDiversity 44K SNP assay, 34 trait... | 186 | Search for SNPs |