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Oryza sativa QTL "AQCC001" (anther length)
| QTL Accession ID | AQCC001 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | ANTLG |
| Trait Name | anther length |
| Published Symbol | qATL-2 |
| Trait Synonym(s) | |
| Trait Category | Anatomy |
| Chromosome | 2 |
| Comments | The QTL is related with key traits of classification for cultivated rice and common wild rice. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 25,459,895-27,035,400 bp | View Comparative Map | |||
|
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | CNCAU Orufi/Gui2 BC1 QTL 2001 | BNL6.32 | 2 | 72.3-82.9 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQCC001 | 2 | 72.3 | 82.9 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | C424 | RFLP | Oryza sativa | qtl_marker |
| To | G39 | RFLP | Oryza sativa | qtl_marker |
| To | C920 | RFLP | Oryza sativa | qtl_marker |
| To | C1408 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000531) | Li-C et al., 2001 (IAGP) |
| Plant Structure | (PO:0009066) | Li-C et al., 2001 (SM) |
| Plant Growth and Development Stage | (PO:0007016) | Li-C et al., 2001 (SM) |
| (PO:0007130 ) | Li-C et al., 2001 (SM) | |
| Growth Stage | (GRO:0007151) | Li-C et al., 2001 (SM) |
| (GRO:0007140) | Li-C et al., 2001 (SM) | |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Li-C et al., 2001 (SM) |
Database Cross-References (1)
SNPs (11,110)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr2 | 25,459,895 | 27,035,400 | ~160K SNPs x 20 accessions (McNally 2... | 773 | Search for SNPs |
| chr2 | 25,459,895 | 27,035,400 | '1536 chip' - 1311 SNPs x 395 rice ac... | 4 | Search for SNPs |
| chr2 | 25,459,895 | 27,035,400 | Huang X, et al, Nat Genetics 2010 Nov... | 5,068 | Search for SNPs |
| chr2 | 25,459,895 | 27,035,400 | RiceDiversity 44K SNP assay, 34 trait... | 5,068 | Search for SNPs |
| chr2 | 25,459,895 | 27,035,400 | RiceDiversity 44K SNP assay, 34 trait... | 197 | Search for SNPs |
