![[Home Page]](/images/icons/gramene_logo180new.jpg "[Home Page]"){kind=icon}
QTL Home |
Simple Search |
Power Search |
Help |
Tutorial |
FAQ
Oryza sativa QTL "AQC017" (penetrated to total root ratio)
| QTL Accession ID | AQC017 | ||||||
|---|---|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
| Trait Symbol | PENTRTRO | ||||||
| Trait Name | penetrated to total root ratio | ||||||
| Published Symbol | |||||||
| Trait Synonym(s) |
|
||||||
| Trait Category | Abiotic stress | ||||||
| Chromosome | 10 | ||||||
| Comments | Related with water stress tolerance. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 10 | 14,155,468-14,156,816 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | Aberdeen Bala/Azu QTL 2002 | BNL6.32 | 10 | 57.8-67 cM | View Comparative Map | |||
|
||||||||
QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQC017 | 10 | 57.8 | 67 |
Associated Markers (3)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | G1082 | RFLP | Oryza sativa | qtl_marker |
| To | RG257 | RFLP | Oryza sativa | qtl_marker |
| To | C16 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000510) | Price-A-H et al., 2000 (IAGP) |
| Plant Structure | (PO:0009005) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| (PO:0007134) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
| (GRO:0007140) | Gramene curators, 2007 (IC) | |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Price-A-H et al., 2000 (SM) |
Database Cross-References (2)
SNPs (2)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr10 | 14,155,468 | 14,156,816 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
| chr10 | 14,155,468 | 14,156,816 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr10 | 14,155,468 | 14,156,816 | Huang X, et al, Nat Genetics 2010 Nov... | 1 | Search for SNPs |
| chr10 | 14,155,468 | 14,156,816 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |
| chr10 | 14,155,468 | 14,156,816 | RiceDiversity 44K SNP assay, 34 trait... | 0 |
