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Oryza sativa QTL "AQBX025" (panicle weight)
| QTL Accession ID | AQBX025 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | PNWT |
| Trait Name | panicle weight |
| Published Symbol | Pdw3-1 |
| Trait Synonym(s) | spike weight |
| Trait Category | Yield |
| Chromosome | 3 |
| Comments | The conditional QTL was detected using panicle weight data measured 10 days after heading. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 5,181,383-5,730,617 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | IRRI IR64/Azu DH QTL 2003 | BNL6.32 | 3 | 20.4-22.4 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQBX025 | 3 | 20.4 | 22.4 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RG100 | RFLP | Oryza sativa | qtl_marker |
| To | RG191 | RFLP | Oryza sativa | qtl_marker |
| To | RZ892 | RFLP | Oryza sativa | qtl_marker |
| To | RZ678 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (7)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000014) | Zhu-J et al., 2000 (IAGP) |
| Plant Structure | (PO:0009049) | Zhu-J et al., 2000 (SM) |
| Plant Growth and Development Stage | (PO:0007041) | Zhu-J et al., 2000 (SM) |
| (PO:0007130) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007044) | Zhu-J et al., 2000 (SM) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Zhu-J et al., 2000 (SM) |
Database Cross-References (1)
SNPs (1,130)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr3 | 5,181,383 | 5,730,617 | ~160K SNPs x 20 accessions (McNally 2... | 255 | Search for SNPs |
| chr3 | 5,181,383 | 5,730,617 | '1536 chip' - 1311 SNPs x 395 rice ac... | 2 | Search for SNPs |
| chr3 | 5,181,383 | 5,730,617 | Huang X, et al, Nat Genetics 2010 Nov... | 408 | Search for SNPs |
| chr3 | 5,181,383 | 5,730,617 | RiceDiversity 44K SNP assay, 34 trait... | 408 | Search for SNPs |
| chr3 | 5,181,383 | 5,730,617 | RiceDiversity 44K SNP assay, 34 trait... | 57 | Search for SNPs |
