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Oryza sativa QTL "AQBX012" (panicle weight)
| QTL Accession ID | AQBX012 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | PNWT |
| Trait Name | panicle weight |
| Published Symbol | Pdw5 |
| Trait Synonym(s) | spike weight |
| Trait Category | Yield |
| Chromosome | 5 |
| Comments | The unconditional QTL was detected using panicle weight data measured 30 days after heading. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 5 | 18,528,503-19,546,377 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | IRRI IR64/Azu DH QTL 2003 | BNL6.32 | 5 | 87.8-108.6 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQBX012 | 5 | 87.8 | 108.6 |
Associated Markers (7)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RZ649 | RFLP | Oryza sativa | qtl_marker |
| To | S2AS3A4 | RFLP | Oryza sativa | qtl_marker |
| To | S2AS3I6 | RFLP | Oryza sativa | qtl_marker |
| To | RG13 | RFLP | Oryza sativa | qtl_marker |
| To | CDO105 | RFLP | Avena sativa | qtl_marker |
| To | S1AS1A1 | RFLP | Oryza sativa | qtl_marker |
| To | RZ67 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (7)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000014) | Zhu-J et al., 2000 (IAGP) |
| Plant Structure | (PO:0009049) | Zhu-J et al., 2000 (SM) |
| Plant Growth and Development Stage | (PO:0007041) | Zhu-J et al., 2000 (SM) |
| (PO:0007130) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007044) | Zhu-J et al., 2000 (SM) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Zhu-J et al., 2000 (SM) |
Database Cross-References (1)
SNPs (5,818)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr5 | 18,528,503 | 19,546,377 | ~160K SNPs x 20 accessions (McNally 2... | 582 | Search for SNPs |
| chr5 | 18,528,503 | 19,546,377 | '1536 chip' - 1311 SNPs x 395 rice ac... | 4 | Search for SNPs |
| chr5 | 18,528,503 | 19,546,377 | Huang X, et al, Nat Genetics 2010 Nov... | 2,566 | Search for SNPs |
| chr5 | 18,528,503 | 19,546,377 | RiceDiversity 44K SNP assay, 34 trait... | 2,566 | Search for SNPs |
| chr5 | 18,528,503 | 19,546,377 | RiceDiversity 44K SNP assay, 34 trait... | 100 | Search for SNPs |
