QTL Accession ID | AQBX011 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | PNWT |
Trait Name | panicle weight |
Published Symbol | Pdw4 |
Trait Synonym(s) | spike weight |
Trait Category | Yield |
Chromosome | 4 |
Comments | The unconditional QTL was detected using panicle weight data measured 40 days after heading. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 24,165,104-24,165,408 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI IR64/Azu DH QTL 2003 | BNL6.32 | 4 | 68.1-82.2 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQBX011 | 4 | 68.1 | 82.2 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RZ675 | RFLP | Oryza sativa | qtl_marker |
To | RG163 | RFLP | Oryza sativa | qtl_marker |
To | RZ565 | RFLP | Oryza sativa | qtl_marker |
To | b2 | RFLP | Hordeum vulgare | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000014) | Zhu-J et al., 2000 (IAGP) |
Plant Structure | (PO:0009049) | Zhu-J et al., 2000 (SM) |
Plant Growth and Development Stage | (PO:0007041) | Zhu-J et al., 2000 (SM) |
(PO:0007130) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007044) | Zhu-J et al., 2000 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Zhu-J et al., 2000 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr4 | 24,165,104 | 24,165,408 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr4 | 24,165,104 | 24,165,408 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr4 | 24,165,104 | 24,165,408 | Huang X, et al, Nat Genetics 2010 Nov... | 1 | Search for SNPs |
chr4 | 24,165,104 | 24,165,408 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |
chr4 | 24,165,104 | 24,165,408 | RiceDiversity 44K SNP assay, 34 trait... | 0 |