QTL Accession ID | AQBX003 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | PNWT |
Trait Name | panicle weight |
Published Symbol | Pdw1-3 |
Trait Synonym(s) | spike weight |
Trait Category | Yield |
Chromosome | 1 |
Comments | The unconditional QTL was detected using panicle weight data measured 20 days after heading. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 40,565,651-40,700,598 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI IR64/Azu DH QTL 2003 | BNL6.32 | 1 | 150.1-151.3 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQBX003 | 1 | 150.1 | 151.3 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RZ801 | RFLP | Oryza sativa | qtl_marker |
To | RG810 | RFLP | Oryza sativa | qtl_marker |
To | RZ730 | RFLP | Oryza sativa | qtl_marker |
To | RG331 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000014) | Zhu-J et al., 2000 (IAGP) |
Plant Structure | (PO:0009049) | Zhu-J et al., 2000 (SM) |
Plant Growth and Development Stage | (PO:0007041) | Zhu-J et al., 2000 (SM) |
(PO:0007130) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007044) | Zhu-J et al., 2000 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Zhu-J et al., 2000 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr1 | 40,565,651 | 40,700,598 | ~160K SNPs x 20 accessions (McNally 2... | 137 | Search for SNPs |
chr1 | 40,565,651 | 40,700,598 | '1536 chip' - 1311 SNPs x 395 rice ac... | 1 | Search for SNPs |
chr1 | 40,565,651 | 40,700,598 | Huang X, et al, Nat Genetics 2010 Nov... | 93 | Search for SNPs |
chr1 | 40,565,651 | 40,700,598 | RiceDiversity 44K SNP assay, 34 trait... | 93 | Search for SNPs |
chr1 | 40,565,651 | 40,700,598 | RiceDiversity 44K SNP assay, 34 trait... | 25 | Search for SNPs |