QTL Accession ID | AQBW001 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | PPDSNGMS |
Trait Name | photoperiod sensitive genic male sterility |
Published Symbol | pms3 |
Trait Synonym(s) |
PGMS genic-photoperiod sensitive male sterility |
Trait Category | Sterility or fertility |
Chromosome | 12 |
Comments | Seed setting rates was measured to evaluate photoperiod-sensitive genic male sterility in rice and used for QTL analysis. The QTL was detected in both F2 populations from the crosses of 58S/1514 and 58S/Lunhui422. The interaction of this QTL with the QTL on chromosome 7, pms1, was significant. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 12 | 18,867,450-23,775,487 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNHZAU 58S/1514 F2 QTL 1999 | BNL6.32 | 12 | 0-27.2 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQBW001 | 12 | 0 | 27.2 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG543 | RFLP | Oryza sativa | qtl_marker |
To | CDO344 | RFLP | Avena sativa | qtl_marker |
To | CDO459 | RFLP | Avena sativa | qtl_marker |
To | R2708 | RFLP | Oryza sativa | qtl_marker |
To | C751 | RFLP | Oryza sativa | qtl_marker |
To | RZ261 | RFLP | Oryza sativa | qtl_marker |
To | C2 | RFLP | Oryza sativa | qtl_marker |
To | G2140 | RFLP | Oryza sativa | qtl_marker |
To | RG9 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000009) | Mei-M-H et al., 1999 (IAGP) |
Plant Structure | (PO:0009046) | Gramene curators, 2007 (IC) |
(PO:0009066) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007016) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007151) | Gramene curators, 2007 (IC) |
Environment | (EO:0007078) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Mei-M-H et al., 1999 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr12 | 18,867,450 | 23,775,487 | ~160K SNPs x 20 accessions (McNally 2... | 1,931 | Search for SNPs |
chr12 | 18,867,450 | 23,775,487 | '1536 chip' - 1311 SNPs x 395 rice ac... | 21 | Search for SNPs |
chr12 | 18,867,450 | 23,775,487 | B-Gross/J-Yulin SNP Pi-ta study in AA... | 0 | |
chr12 | 18,867,450 | 23,775,487 | Huang X, et al, Nat Genetics 2010 Nov... | 13,987 | Search for SNPs |
chr12 | 18,867,450 | 23,775,487 | RiceDiversity 44K SNP assay, 34 trait... | 13,987 | Search for SNPs |
chr12 | 18,867,450 | 23,775,487 | RiceDiversity 44K SNP assay, 34 trait... | 463 | Search for SNPs |