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Oryza sativa QTL "AQBU002" (green leafhopper resistance)
| QTL Accession ID | AQBU002 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | GLFHRS |
| Trait Name | green leafhopper resistance |
| Published Symbol | |
| Trait Synonym(s) | |
| Trait Category | Biotic stress |
| Chromosome | 11 |
| Comments | Resistant fragment existed in Norin-PL6, which can be traced back to indica variety, Lepe-dumai. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 11 | 21,342,178-24,200,737 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 11 | 85.7-99.2 cM | View Comparative Map | |||
|
||||||||
QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQBU002 | 11 | 85.7 | 99.2 |
Associated Markers (23)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | S723 | RFLP | Oryza sativa | qtl_marker |
| To | C189 | RFLP | Oryza sativa | qtl_marker |
| To | RZ537 | RFLP | Oryza sativa | qtl_marker |
| To | C1003 | RFLP | Oryza sativa | qtl_marker |
| To | E1981S | RFLP | Oryza sativa | qtl_marker |
| To | E4336S | RFLP | Oryza sativa | qtl_marker |
| To | S10928 | RFLP | Oryza sativa | qtl_marker |
| To | C50 | RFLP | Oryza sativa | qtl_marker |
| To | R2458 | RFLP | Oryza sativa | qtl_marker |
| To | V9 | RFLP | Oryza sativa | qtl_marker |
| To | E3752S | RFLP | Oryza sativa | qtl_marker |
| To | C6 | RFLP | Oryza sativa | qtl_marker |
| To | G4001 | RFLP | Oryza sativa | qtl_marker |
| To | E10310S | RFLP | Oryza sativa | qtl_marker |
| To | V240 | RFLP | Oryza sativa | qtl_marker |
| To | G1465 | RFLP | Oryza sativa | qtl_marker |
| To | V191 | RFLP | Oryza sativa | qtl_marker |
| To | C10775S | RFLP | Oryza sativa | qtl_marker |
| To | E61360S | RFLP | Oryza sativa | qtl_marker |
| To | C53951 | RFLP | Oryza sativa | qtl_marker |
| To | G376 | RFLP | Oryza sativa | qtl_marker |
| To | S20160 | RFLP | Oryza sativa | qtl_marker |
| To | M305 | RFLP | Zea mays subsp. mays | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000212) | Fukuta-Y et al., 1998 (IAGP) |
| Plant Structure | (PO:0009011) | Fukuta-Y et al., 1998 (SM) |
| (PO:0000003) | Fukuta-Y et al., 1998 (SM) | |
| Plant Growth and Development Stage | (PO:0009012) | Fukuta-Y et al., 1998 (SM) |
| (PO:0007033) | Fukuta-Y et al., 1998 (SM) | |
| Growth Stage | (GRO:0007001) | Fukuta-Y et al., 1998 (SM) |
| Environment | (EO:0007308) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Fukuta-Y et al., 1998 (SM) |
Database Cross-References (1)
SNPs (20,544)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr11 | 21,342,178 | 24,200,737 | ~160K SNPs x 20 accessions (McNally 2... | 1,395 | Search for SNPs |
| chr11 | 21,342,178 | 24,200,737 | '1536 chip' - 1311 SNPs x 395 rice ac... | 18 | Search for SNPs |
| chr11 | 21,342,178 | 24,200,737 | Huang X, et al, Nat Genetics 2010 Nov... | 9,165 | Search for SNPs |
| chr11 | 21,342,178 | 24,200,737 | RiceDiversity 44K SNP assay, 34 trait... | 9,165 | Search for SNPs |
| chr11 | 21,342,178 | 24,200,737 | RiceDiversity 44K SNP assay, 34 trait... | 801 | Search for SNPs |
