QTL Accession ID | AQBU001 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | GLFHRS |
Trait Name | green leafhopper resistance |
Published Symbol | |
Trait Synonym(s) | |
Trait Category | Biotic stress |
Chromosome | 3 |
Comments | Resistant fragment existed in Norin-PL6, which can be traced back to indica variety, Lepe-dumai. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 13,132,768-15,646,332 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 3 | 61.4-73.5 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQBU001 | 3 | 61.4 | 73.5 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C1452 | RFLP | Oryza sativa | qtl_marker |
To | C198 | RFLP | Oryza sativa | qtl_marker |
To | C582 | RFLP | Oryza sativa | qtl_marker |
To | C730 | RFLP | Oryza sativa | qtl_marker |
To | R2170 | RFLP | Oryza sativa | qtl_marker |
To | R2387 | RFLP | Oryza sativa | qtl_marker |
To | C603 | RFLP | Oryza sativa | qtl_marker |
To | R2877S | RFLP | Oryza sativa | qtl_marker |
To | R1420 | RFLP | Oryza sativa | qtl_marker |
To | R44 | RFLP | Oryza sativa | qtl_marker |
To | C12845S | RFLP | Oryza sativa | qtl_marker |
To | C361 | RFLP | Oryza sativa | qtl_marker |
To | C1186 | RFLP | Oryza sativa | qtl_marker |
To | Y3870L | RFLP | Oryza sativa | qtl_marker |
To | S11493 | RFLP | Oryza sativa | qtl_marker |
To | V9 | RFLP | Oryza sativa | qtl_marker |
To | R2982 | RFLP | Oryza sativa | qtl_marker |
To | G144 | RFLP | Oryza sativa | qtl_marker |
To | C11260S | RFLP | Oryza sativa | qtl_marker |
To | C2942 | RFLP | Oryza sativa | qtl_marker |
To | C1677 | RFLP | Oryza sativa | qtl_marker |
To | R663 | RFLP | Oryza sativa | qtl_marker |
To | C60910 | RFLP | Oryza sativa | qtl_marker |
To | S1764 | RFLP | Oryza sativa | qtl_marker |
To | Y3870R | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000212) | Fukuta-Y et al., 1998 (IAGP) |
Plant Structure | (PO:0009011) | Fukuta-Y et al., 1998 (SM) |
(PO:0000003) | Fukuta-Y et al., 1998 (SM) | |
Plant Growth and Development Stage | (PO:0009012) | Fukuta-Y et al., 1998 (SM) |
(PO:0007033) | Fukuta-Y et al., 1998 (SM) | |
Growth Stage | (GRO:0007001) | Fukuta-Y et al., 1998 (SM) |
Environment | (EO:0007308) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Fukuta-Y et al., 1998 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr3 | 13,132,768 | 15,646,332 | ~160K SNPs x 20 accessions (McNally 2... | 1,099 | Search for SNPs |
chr3 | 13,132,768 | 15,646,332 | '1536 chip' - 1311 SNPs x 395 rice ac... | 13 | Search for SNPs |
chr3 | 13,132,768 | 15,646,332 | Huang X, et al, Nat Genetics 2010 Nov... | 4,752 | Search for SNPs |
chr3 | 13,132,768 | 15,646,332 | RiceDiversity 44K SNP assay, 34 trait... | 4,752 | Search for SNPs |
chr3 | 13,132,768 | 15,646,332 | RiceDiversity 44K SNP assay, 34 trait... | 274 | Search for SNPs |