QTL Accession ID | AQBT002 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | BBRS | ||||
Trait Name | bacterial blight disease resistance | ||||
Published Symbol | |||||
Trait Synonym(s) |
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Trait Category | Biotic stress | ||||
Chromosome | 3 | ||||
Comments | Lesion length caused by infection with Xoo stain, CR4, was measured to evaluate resistance to bacterial blight disease and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 718,777-1,450,227 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI Lem/Teq RI QTL 2001 | BNL6.32 | 3 | 2.5-7.3 cM | View Comparative Map | |||
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Name | Chromosome | Start | Stop |
---|---|---|---|
AQBT002 | 3 | 2.5 | 7.3 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C515 | RFLP | Oryza sativa | qtl_marker |
To | RG348 | RFLP | Oryza sativa | qtl_marker |
To | RG104 | RFLP | Oryza sativa | qtl_marker |
To | C636 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000175) | Li-Z-K et al., 1999 (IAGP) |
Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
(PO:0009011) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007033) | Gramene curators, 2007 (IC) |
(PO:0009012) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
Environment | (EO:0007246) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Li-Z-K et al., 1999 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr3 | 718,777 | 1,450,227 | ~160K SNPs x 20 accessions (McNally 2... | 429 | Search for SNPs |
chr3 | 718,777 | 1,450,227 | '1536 chip' - 1311 SNPs x 395 rice ac... | 5 | Search for SNPs |
chr3 | 718,777 | 1,450,227 | Huang X, et al, Nat Genetics 2010 Nov... | 477 | Search for SNPs |
chr3 | 718,777 | 1,450,227 | RiceDiversity 44K SNP assay, 34 trait... | 477 | Search for SNPs |
chr3 | 718,777 | 1,450,227 | RiceDiversity 44K SNP assay, 34 trait... | 110 | Search for SNPs |