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Oryza sativa QTL "AQBS038" (grain number)
| QTL Accession ID | AQBS038 | ||||||
|---|---|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
| Trait Symbol | GRNB | ||||||
| Trait Name | grain number | ||||||
| Published Symbol | gpp8.1 | ||||||
| Trait Synonym(s) |
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| Trait Category | Yield | ||||||
| Chromosome | 8 | ||||||
| Comments | O. rufipogon-derived QTL. Grains per panicle was measured to evaluate grain number and used for QTL analysis. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 8 | 5,748,701-5,749,282 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | Cornell V20A/Oruf QTL 1998 | BNL6.32 | 8 | 0-0 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQBS038 | 8 | 0 | 0 |
Associated Markers (3)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RM25 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | BCD147 | RFLP | Hordeum vulgare | qtl_marker |
| To | RZ323 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (7)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000445) | Xiao-J-H et al., 1998 (IAGP) |
| Plant Structure | (PO:0009001) | Xiao-J-H et al., 1998 (SM) |
| (PO:0009010) | Gramene curators, 2007 (IC) | |
| Plant Growth and Development Stage | (PO:0007038 ) | Xiao-J-H et al., 1998 (SM) |
| Growth Stage | (GRO:0007045) | Xiao-J-H et al., 1998 (SM) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Xiao-J-H et al., 1998 (SM) |
Database Cross-References (1)
SNPs (4)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr8 | 5,748,701 | 5,749,282 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
| chr8 | 5,748,701 | 5,749,282 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr8 | 5,748,701 | 5,749,282 | Huang X, et al, Nat Genetics 2010 Nov... | 2 | Search for SNPs |
| chr8 | 5,748,701 | 5,749,282 | RiceDiversity 44K SNP assay, 34 trait... | 2 | Search for SNPs |
| chr8 | 5,748,701 | 5,749,282 | RiceDiversity 44K SNP assay, 34 trait... | 0 |
