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Oryza sativa QTL "AQBS012" (days to maturity)
| QTL Accession ID | AQBS012 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | DTMT |
| Trait Name | days to maturity |
| Published Symbol | dtm6.1 |
| Trait Synonym(s) | |
| Trait Category | Development |
| Chromosome | 6 |
| Comments | O. rufipogon-derived QTL. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 3,459,492-6,928,661 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | Cornell V20A/Oruf QTL 1998 | BNL6.32 | 6 | 0-20.4 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQBS012 | 6 | 0 | 20.4 |
Associated Markers (6)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RZ398 | RFLP | Oryza sativa | qtl_marker |
| To | RM253 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RZ667 | RFLP | Oryza sativa | qtl_marker |
| To | RG264 | RFLP | Oryza sativa | qtl_marker |
| To | RM3 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | G1314 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000469) | Xiao-J-H et al., 1998 (IAGP) |
| Plant Structure | (PO:0000003) | Xiao-J-H et al., 1998 (SM) |
| Plant Growth and Development Stage | (PO:0007130) | Xiao-J-H et al., 1998 (SM) |
| (PO:0007038) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007140) | Xiao-J-H et al., 1998 (SM) |
| (GRO:0007045) | Gramene curators, 2007 (IC) | |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Xiao-J-H et al., 1998 (SM) |
Database Cross-References (1)
SNPs (22,339)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr6 | 3,459,492 | 6,928,661 | ~160K SNPs x 20 accessions (McNally 2... | 1,548 | Search for SNPs |
| chr6 | 3,459,492 | 6,928,661 | '1536 chip' - 1311 SNPs x 395 rice ac... | 14 | Search for SNPs |
| chr6 | 3,459,492 | 6,928,661 | Huang X, et al, Nat Genetics 2010 Nov... | 10,209 | Search for SNPs |
| chr6 | 3,459,492 | 6,928,661 | RiceDiversity 44K SNP assay, 34 trait... | 10,209 | Search for SNPs |
| chr6 | 3,459,492 | 6,928,661 | RiceDiversity 44K SNP assay, 34 trait... | 359 | Search for SNPs |
